J3_5V7Q_005

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V7Q_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2458

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5V7Q|1|A|C|1429
5V7Q|1|A|G|1430
5V7Q|1|A|A|1431
5V7Q|1|A|A|1432
5V7Q|1|A|A|1433
5V7Q|1|A|G|1434
*
5V7Q|1|A|C|1860
5V7Q|1|A|A|1861
5V7Q|1|A|G|1862
*
5V7Q|1|A|C|1874
5V7Q|1|A|A|1875
5V7Q|1|A|A|1876
5V7Q|1|A|G|1877

Current chains

Chain A

23S rRNA

Nearby chains