J3_5V7Q_006

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAG*CCCAAAC*GUGG

Length

16 nucleotides

Bulged bases

5V7Q|1|A|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V7Q_006 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.211

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5V7Q|1|A|C|1436
5V7Q|1|A|C|1437
5V7Q|1|A|A|1438
5V7Q|1|A|A|1439
5V7Q|1|A|G|1440
*
5V7Q|1|A|C|1840
5V7Q|1|A|C|1841
5V7Q|1|A|C|1842
5V7Q|1|A|A|1843
5V7Q|1|A|A|1844
5V7Q|1|A|A|1845
5V7Q|1|A|C|1846
*
5V7Q|1|A|G|1855
5V7Q|1|A|U|1856
5V7Q|1|A|G|1857
5V7Q|1|A|G|1858

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34