J3_5V7Q_016
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 5V7Q|1|A|U|537, 5V7Q|1|A|U|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V7Q_016 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1705
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
5V7Q|1|A|C|32
5V7Q|1|A|U|33
5V7Q|1|A|U|34
5V7Q|1|A|G|35
*
5V7Q|1|A|C|534
5V7Q|1|A|G|535
5V7Q|1|A|A|536
5V7Q|1|A|U|537
5V7Q|1|A|A|538
5V7Q|1|A|G|539
5V7Q|1|A|C|540
5V7Q|1|A|G|541
5V7Q|1|A|G|542
5V7Q|1|A|A|543
5V7Q|1|A|U|544
5V7Q|1|A|U|545
5V7Q|1|A|A|546
5V7Q|1|A|G|547
5V7Q|1|A|U|548
5V7Q|1|A|A|549
5V7Q|1|A|C|550
*
5V7Q|1|A|G|557
5V7Q|1|A|G|558
5V7Q|1|A|A|559
5V7Q|1|A|A|560
5V7Q|1|A|U|561
5V7Q|1|A|G|562
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain T
- 50S ribosomal protein L23
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