J3_5V93_018

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5V93|1|a|U|864, 5V93|1|a|A|866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_018 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1572

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5V93|1|a|C|817
5V93|1|a|U|818
5V93|1|a|A|819
5V93|1|a|G|820
*
5V93|1|a|C|850
5V93|1|a|G|851
5V93|1|a|U|852
5V93|1|a|A|853
5V93|1|a|G|854
*
5V93|1|a|C|861
5V93|1|a|A|862
5V93|1|a|U|863
5V93|1|a|U|864
5V93|1|a|A|865
5V93|1|a|A|866
5V93|1|a|G|867

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8