J3_5VPO_004

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5VPO|1|QA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1866

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5VPO|1|QA|C|826
5VPO|1|QA|U|827
5VPO|1|QA|A|828
5VPO|1|QA|G|829
*
5VPO|1|QA|C|857
5VPO|1|QA|G|858
5VPO|1|QA|A|859
5VPO|1|QA|A|860
5VPO|1|QA|G|861
*
5VPO|1|QA|C|868
5VPO|1|QA|G|869
5VPO|1|QA|U|870
5VPO|1|QA|U|871
5VPO|1|QA|A|872
5VPO|1|QA|A|873
5VPO|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8