J3_5VPO_070
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 5VPO|1|YA|U|504, 5VPO|1|YA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPO_070 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1117
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5VPO|1|YA|G|30
5VPO|1|YA|C|31
*
5VPO|1|YA|G|474
5VPO|1|YA|U|475
5VPO|1|YA|G|476
5VPO|1|YA|A|477
5VPO|1|YA|A|478
5VPO|1|YA|A|479
5VPO|1|YA|A|480
5VPO|1|YA|G|481
5VPO|1|YA|A|482
5VPO|1|YA|A|483
5VPO|1|YA|C|484
*
5VPO|1|YA|G|496
5VPO|1|YA|A|497
5VPO|1|YA|G|498
5VPO|1|YA|U|499
5VPO|1|YA|G|500
5VPO|1|YA|A|501
5VPO|1|YA|A|502
5VPO|1|YA|A|503
5VPO|1|YA|U|504
5VPO|1|YA|A|505
5VPO|1|YA|G|506
5VPO|1|YA|A|507
5VPO|1|YA|G|508
5VPO|1|YA|C|509
5VPO|1|YA|C|510
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
- Chain YY
- 50S ribosomal protein L24
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