J3_5VPP_004
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5VPP|1|QA|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPP_004 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.1195
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5VPP|1|QA|C|826
5VPP|1|QA|U|827
5VPP|1|QA|A|828
5VPP|1|QA|G|829
*
5VPP|1|QA|C|857
5VPP|1|QA|G|858
5VPP|1|QA|A|859
5VPP|1|QA|A|860
5VPP|1|QA|G|861
*
5VPP|1|QA|C|868
5VPP|1|QA|G|869
5VPP|1|QA|U|870
5VPP|1|QA|U|871
5VPP|1|QA|A|872
5VPP|1|QA|A|873
5VPP|1|QA|G|874
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QB
- 30S ribosomal protein S2
- Chain QH
- 30S ribosomal protein S8
- Chain QX
- messenger RNA
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