J3_5VPP_031

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5VPP|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1127

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5VPP|1|XA|C|826
5VPP|1|XA|U|827
5VPP|1|XA|A|828
5VPP|1|XA|G|829
*
5VPP|1|XA|C|857
5VPP|1|XA|G|858
5VPP|1|XA|A|859
5VPP|1|XA|A|860
5VPP|1|XA|G|861
*
5VPP|1|XA|C|868
5VPP|1|XA|G|869
5VPP|1|XA|U|870
5VPP|1|XA|U|871
5VPP|1|XA|A|872
5VPP|1|XA|A|873
5VPP|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8

Chain XX

messenger RNA