J3_5VPP_077

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

5VPP|1|YA|U|504, 5VPP|1|YA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_077 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1098

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5VPP|1|YA|G|30
5VPP|1|YA|C|31
*
5VPP|1|YA|G|474
5VPP|1|YA|U|475
5VPP|1|YA|G|476
5VPP|1|YA|A|477
5VPP|1|YA|A|478
5VPP|1|YA|A|479
5VPP|1|YA|A|480
5VPP|1|YA|G|481
5VPP|1|YA|A|482
5VPP|1|YA|A|483
5VPP|1|YA|C|484
*
5VPP|1|YA|G|496
5VPP|1|YA|A|497
5VPP|1|YA|G|498
5VPP|1|YA|U|499
5VPP|1|YA|G|500
5VPP|1|YA|A|501
5VPP|1|YA|A|502
5VPP|1|YA|A|503
5VPP|1|YA|U|504
5VPP|1|YA|A|505
5VPP|1|YA|G|506
5VPP|1|YA|A|507
5VPP|1|YA|G|508
5VPP|1|YA|C|509
5VPP|1|YA|C|510

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YU

50S ribosomal protein L20

Chain YW

50S ribosomal protein L22

Chain YY

50S ribosomal protein L24