J3_5VYC_014
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VYC_014 not in the Motif Atlas
- Homologous match to J3_8C3A_042
- Geometric discrepancy: 0.276
- The information below is about J3_8C3A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67213.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5VYC|1|i2|U|1339
5VYC|1|i2|U|1340
5VYC|1|i2|C|1341
5VYC|1|i2|U|1342
5VYC|1|i2|U|1343
5VYC|1|i2|A|1344
5VYC|1|i2|G|1345
*
5VYC|1|i2|C|1384
5VYC|1|i2|G|1385
5VYC|1|i2|A|1386
5VYC|1|i2|G|1387
5VYC|1|i2|A|1388
5VYC|1|i2|C|1389
*
5VYC|1|i2|G|1481
5VYC|1|i2|C|1482
5VYC|1|i2|A|1483
5VYC|1|i2|A|1484
5VYC|1|i2|U|1485
5VYC|1|i2|A|1486
5VYC|1|i2|A|1487
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain C2
- 40S ribosomal protein S2
- Chain D2
- 40S ribosomal protein S3
- Chain Q2
- 40S ribosomal protein S16
- Chain R2
- 40S ribosomal protein S17
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29
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