J3_5VYC_047

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VYC_047 not in the Motif Atlas

Geometric match to J3_8C3A_085

Geometric discrepancy: 0.174

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5VYC|1|i6|U|1350
5VYC|1|i6|G|1351
*
5VYC|1|i6|U|1360
5VYC|1|i6|G|1361
5VYC|1|i6|U|1362
5VYC|1|i6|C|1363
*
5VYC|1|i6|G|1375
5VYC|1|i6|A|1376
5VYC|1|i6|U|1377
5VYC|1|i6|A|1378
5VYC|1|i6|A|1379

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain A6

40S ribosomal protein SA

Chain C6

40S ribosomal protein S2

Chain R6

40S ribosomal protein S17