J3_5VYC_048
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 5VYC|1|i6|U|1535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VYC_048 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.2652
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
5VYC|1|i6|C|1532
5VYC|1|i6|A|1533
5VYC|1|i6|C|1534
5VYC|1|i6|U|1535
5VYC|1|i6|G|1536
*
5VYC|1|i6|C|1597
5VYC|1|i6|G|1598
5VYC|1|i6|U|1599
5VYC|1|i6|G|1600
5VYC|1|i6|A|1601
5VYC|1|i6|U|1602
5VYC|1|i6|G|1603
5VYC|1|i6|G|1604
*
5VYC|1|i6|C|1635
5VYC|1|i6|G|1636
5VYC|1|i6|A|1637
5VYC|1|i6|G|1638
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain F6
- 40S ribosomal protein S5
- Chain S6
- 40S ribosomal protein S18
- Chain T6
- 40S ribosomal protein S19
- Chain Z6
- 40S ribosomal protein S25
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