J3_5VYC_112
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- 5VYC|1|i3|G|1639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VYC_112 not in the Motif Atlas
- Homologous match to J3_8P9A_077
- Geometric discrepancy: 0.2829
- The information below is about J3_8P9A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5VYC|1|i3|U|1225
5VYC|1|i3|G|1226
5VYC|1|i3|G|1227
5VYC|1|i3|A|1228
*
5VYC|1|i3|U|1530
5VYC|1|i3|A|1531
5VYC|1|i3|C|1532
*
5VYC|1|i3|G|1638
5VYC|1|i3|G|1639
5VYC|1|i3|A|1640
5VYC|1|i3|A|1641
Current chains
- Chain i3
- Human 18S ribosomal RNA
Nearby chains
- Chain F3
- 40S ribosomal protein S5
- Chain I6
- 40S ribosomal protein S8
- Chain Q3
- 40S ribosomal protein S16
- Chain S3
- 40S ribosomal protein S18
- Chain T3
- 40S ribosomal protein S19
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