J3_5W4K_044

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5W4K|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5W4K_044 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0653

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5W4K|1|2a|C|826
5W4K|1|2a|U|827
5W4K|1|2a|A|828
5W4K|1|2a|G|829
*
5W4K|1|2a|C|857
5W4K|1|2a|G|858
5W4K|1|2a|A|859
5W4K|1|2a|A|860
5W4K|1|2a|G|861
*
5W4K|1|2a|C|868
5W4K|1|2a|G|869
5W4K|1|2a|U|870
5W4K|1|2a|U|871
5W4K|1|2a|A|872
5W4K|1|2a|A|873
5W4K|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8