J3_5W4K_064

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5W4K|1|2A|C|34, 5W4K|1|2A|U|448, 5W4K|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5W4K_064 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0692

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

5W4K|1|2A|C|32
5W4K|1|2A|U|33
5W4K|1|2A|C|34
5W4K|1|2A|G|35
*
5W4K|1|2A|C|445
5W4K|1|2A|G|446
5W4K|1|2A|A|447
5W4K|1|2A|U|448
5W4K|1|2A|A|449
5W4K|1|2A|G|450
5W4K|1|2A|C|451
5W4K|1|2A|G|452
5W4K|1|2A|C|453
5W4K|1|2A|A|454
5W4K|1|2A|C|455
5W4K|1|2A|C|456
5W4K|1|2A|A|457
5W4K|1|2A|G|458
5W4K|1|2A|U|459
5W4K|1|2A|A|460
5W4K|1|2A|C|461
*
5W4K|1|2A|G|468
5W4K|1|2A|G|469
5W4K|1|2A|A|470
5W4K|1|2A|A|471
5W4K|1|2A|A|472
5W4K|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23