J3_5WDT_033

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5WDT|1|a|U|1212, 5WDT|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WDT_033 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1952

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5WDT|1|a|C|990
5WDT|1|a|U|991
5WDT|1|a|U|992
5WDT|1|a|G|993
5WDT|1|a|A|994
5WDT|1|a|C|995
5WDT|1|a|A|996
5WDT|1|a|U|997
*
5WDT|1|a|A|1044
5WDT|1|a|C|1045
5WDT|1|a|A|1046
5WDT|1|a|G|1047
*
5WDT|1|a|C|1210
5WDT|1|a|U|1211
5WDT|1|a|U|1212
5WDT|1|a|A|1213
5WDT|1|a|C|1214
5WDT|1|a|G|1215

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14