J3_5WE4_005

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WE4_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0619

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WE4|1|A|C|1298
5WE4|1|A|G|1299
5WE4|1|A|G|1300
5WE4|1|A|A|1301
5WE4|1|A|A|1302
5WE4|1|A|G|1303
*
5WE4|1|A|C|1625
5WE4|1|A|A|1626
5WE4|1|A|G|1627
*
5WE4|1|A|C|1639
5WE4|1|A|A|1640
5WE4|1|A|A|1641
5WE4|1|A|G|1642

Current chains

Chain A

23S rRNA

Nearby chains