J3_5WE4_029

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WE4_029 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0627

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5WE4|1|A|G|1424
5WE4|1|A|G|1425
5WE4|1|A|G|1426
5WE4|1|A|A|1427
5WE4|1|A|C|1428
5WE4|1|A|G|1429
*
5WE4|1|A|C|1564
5WE4|1|A|C|1565
*
5WE4|1|A|G|1568
5WE4|1|A|A|1569
5WE4|1|A|A|1570
5WE4|1|A|A|1571
5WE4|1|A|A|1572
5WE4|1|A|G|1573
5WE4|1|A|C|1574

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2