J3_5WF0_005

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WF0_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0617

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WF0|1|A|C|1298
5WF0|1|A|G|1299
5WF0|1|A|G|1300
5WF0|1|A|A|1301
5WF0|1|A|A|1302
5WF0|1|A|G|1303
*
5WF0|1|A|C|1625
5WF0|1|A|A|1626
5WF0|1|A|G|1627
*
5WF0|1|A|C|1639
5WF0|1|A|A|1640
5WF0|1|A|A|1641
5WF0|1|A|G|1642

Current chains

Chain A

23S rRNA

Nearby chains