J3_5WFK_006

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5WFK|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFK_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1241

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5WFK|1|A|C|1306
5WFK|1|A|A|1307
5WFK|1|A|A|1308
5WFK|1|A|G|1309
*
5WFK|1|A|C|1605
5WFK|1|A|C|1606
5WFK|1|A|C|1607
5WFK|1|A|A|1608
5WFK|1|A|A|1609
5WFK|1|A|A|1610
5WFK|1|A|C|1611
*
5WFK|1|A|G|1620
5WFK|1|A|U|1621
5WFK|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34