J3_5WFS_028

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFS_028 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0527

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5WFS|1|A|G|1424
5WFS|1|A|G|1425
5WFS|1|A|G|1426
5WFS|1|A|A|1427
5WFS|1|A|C|1428
5WFS|1|A|G|1429
*
5WFS|1|A|C|1564
5WFS|1|A|C|1565
*
5WFS|1|A|G|1568
5WFS|1|A|A|1569
5WFS|1|A|A|1570
5WFS|1|A|A|1571
5WFS|1|A|A|1572
5WFS|1|A|G|1573
5WFS|1|A|C|1574

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2