J3_5WIT_066

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

5WIT|1|2A|U|504, 5WIT|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WIT_066 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0597

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5WIT|1|2A|G|30
5WIT|1|2A|C|31
*
5WIT|1|2A|G|474
5WIT|1|2A|U|475
5WIT|1|2A|G|476
5WIT|1|2A|A|477
5WIT|1|2A|A|478
5WIT|1|2A|A|479
5WIT|1|2A|A|480
5WIT|1|2A|G|481
5WIT|1|2A|A|482
5WIT|1|2A|A|483
5WIT|1|2A|C|484
*
5WIT|1|2A|G|496
5WIT|1|2A|A|497
5WIT|1|2A|G|498
5WIT|1|2A|U|499
5WIT|1|2A|G|500
5WIT|1|2A|A|501
5WIT|1|2A|A|502
5WIT|1|2A|A|503
5WIT|1|2A|U|504
5WIT|1|2A|A|505
5WIT|1|2A|G|506
5WIT|1|2A|A|507
5WIT|1|2A|G|508
5WIT|1|2A|C|509
5WIT|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24