J3_5WNR_016

3D structure

PDB id

5WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WNR_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2469

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5WNR|1|A|C|990
5WNR|1|A|U|991
5WNR|1|A|U|992
5WNR|1|A|G|993
5WNR|1|A|A|994
5WNR|1|A|C|995
5WNR|1|A|A|996
5WNR|1|A|U|997
*
5WNR|1|A|A|1044
5WNR|1|A|C|1045
5WNR|1|A|A|1046
5WNR|1|A|G|1047
*
5WNR|1|A|C|1210
5WNR|1|A|U|1211
5WNR|1|A|U|1212
5WNR|1|A|A|1213
5WNR|1|A|C|1214
5WNR|1|A|G|1215

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z