J3_5WYJ_002

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

UGA*UAAUA*UA

Length

10 nucleotides

Bulged bases

5WYJ|1|SA|U|864

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WYJ_002 not in the Motif Atlas

Geometric match to J3_4V88_080

Geometric discrepancy: 0.2587

The information below is about J3_4V88_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.3

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

5WYJ|1|SA|U|633
5WYJ|1|SA|G|634
5WYJ|1|SA|A|635
*
5WYJ|1|SA|U|861
5WYJ|1|SA|A|862
5WYJ|1|SA|A|863
5WYJ|1|SA|U|864
5WYJ|1|SA|A|865
*
5WYJ|1|SA|U|965
5WYJ|1|SA|A|966

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S7-A

Chain SO

40S ribosomal protein S13

Chain SX

40S ribosomal protein S22-A

Chain Sc

40S ribosomal protein S27-A