J3_5XYM_007

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5XYM|1|A|C|1828, 5XYM|1|A|A|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYM_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.3658

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5XYM|1|A|C|1424
5XYM|1|A|A|1425
5XYM|1|A|A|1426
5XYM|1|A|G|1427
*
5XYM|1|A|C|1826
5XYM|1|A|C|1827
5XYM|1|A|C|1828
5XYM|1|A|A|1829
5XYM|1|A|A|1830
5XYM|1|A|A|1831
5XYM|1|A|C|1832
*
5XYM|1|A|G|1841
5XYM|1|A|U|1842
5XYM|1|A|G|1843

Current chains

Chain A

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34