J3_5XYM_014
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GUCCAUAG*CGC*GACAC
- Length
- 16 nucleotides
- Bulged bases
- 5XYM|1|B|C|12, 5XYM|1|B|U|15, 5XYM|1|B|C|106
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5XYM_014 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.2521
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5XYM|1|B|G|10
5XYM|1|B|U|11
5XYM|1|B|C|12
5XYM|1|B|C|13
5XYM|1|B|A|14
5XYM|1|B|U|15
5XYM|1|B|A|16
5XYM|1|B|G|17
*
5XYM|1|B|C|69
5XYM|1|B|G|70
5XYM|1|B|C|71
*
5XYM|1|B|G|104
5XYM|1|B|A|105
5XYM|1|B|C|106
5XYM|1|B|A|107
5XYM|1|B|C|108
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
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