J3_5XYU_004

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5XYU|1|A|U|853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYU_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1685

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5XYU|1|A|C|806
5XYU|1|A|U|807
5XYU|1|A|A|808
5XYU|1|A|G|809
*
5XYU|1|A|C|839
5XYU|1|A|G|840
5XYU|1|A|U|841
5XYU|1|A|A|842
5XYU|1|A|G|843
*
5XYU|1|A|C|850
5XYU|1|A|A|851
5XYU|1|A|U|852
5XYU|1|A|U|853
5XYU|1|A|A|854
5XYU|1|A|A|855
5XYU|1|A|G|856

Current chains

Chain A

16S RNA

Nearby chains

Chain H

30S ribosomal protein S8