J3_5XYU_006

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGGA*UAC*GGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYU_006 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1064

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5XYU|1|A|C|925
5XYU|1|A|G|926
5XYU|1|A|G|927
5XYU|1|A|A|928
*
5XYU|1|A|U|1216
5XYU|1|A|A|1217
5XYU|1|A|C|1218
*
5XYU|1|A|G|1319
5XYU|1|A|G|1320
5XYU|1|A|A|1321
5XYU|1|A|G|1322

Current chains

Chain A

16S RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain M

30S ribosomal protein S13