J3_5XYU_013
3D structure
- PDB id
- 5XYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of Mycobacterium smegmatis ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 5XYU|1|A|A|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5XYU_013 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.1197
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5XYU|1|A|U|566
5XYU|1|A|G|567
5XYU|1|A|G|568
*
5XYU|1|A|C|631
5XYU|1|A|U|632
5XYU|1|A|A|633
5XYU|1|A|G|634
5XYU|1|A|A|635
*
5XYU|1|A|U|731
5XYU|1|A|G|732
5XYU|1|A|A|733
5XYU|1|A|C|734
5XYU|1|A|G|735
Current chains
- Chain A
- 16S RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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