J3_5Z3G_002
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 5Z3G|1|A|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5Z3G_002 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1339
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5Z3G|1|A|U|502
5Z3G|1|A|C|503
*
5Z3G|1|A|G|588
5Z3G|1|A|A|589
5Z3G|1|A|G|590
5Z3G|1|A|G|591
5Z3G|1|A|A|592
5Z3G|1|A|C|593
5Z3G|1|A|U|594
5Z3G|1|A|G|595
5Z3G|1|A|C|596
5Z3G|1|A|G|597
*
5Z3G|1|A|C|606
5Z3G|1|A|A|607
5Z3G|1|A|A|608
5Z3G|1|A|G|609
5Z3G|1|A|G|610
5Z3G|1|A|A|611
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain I
- 60S ribosomal protein L6-A
- Chain J
- 60S ribosomal protein L7-A
- Chain i
- 60S ribosomal protein L32
Coloring options: