J3_5Z3G_005
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5Z3G|1|A|U|343, 5Z3G|1|A|A|351, 5Z3G|1|B|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5Z3G_005 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.1056
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
5Z3G|1|A|C|340
5Z3G|1|A|G|341
5Z3G|1|A|A|342
5Z3G|1|A|U|343
5Z3G|1|A|A|344
5Z3G|1|A|G|345
5Z3G|1|A|C|346
5Z3G|1|A|G|347
5Z3G|1|A|A|348
5Z3G|1|A|A|349
5Z3G|1|A|C|350
5Z3G|1|A|A|351
5Z3G|1|A|A|352
5Z3G|1|A|G|353
5Z3G|1|A|U|354
5Z3G|1|A|A|355
5Z3G|1|A|C|356
*
5Z3G|1|A|G|363
5Z3G|1|A|G|364
5Z3G|1|A|A|365
5Z3G|1|A|A|366
5Z3G|1|A|A|367
5Z3G|1|A|G|368
*
5Z3G|1|B|C|21
5Z3G|1|B|U|22
5Z3G|1|B|U|23
5Z3G|1|B|G|24
Current chains
- Chain A
- 25S rRNA
- Chain B
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain c
- 60S ribosomal protein L26-A
- Chain d
- Unassigned
- Chain n
- 60S ribosomal protein L37-A
Coloring options: