J3_5ZEB_020

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5ZEB|1|a|U|853, 5ZEB|1|a|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEB_020 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1152

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5ZEB|1|a|C|806
5ZEB|1|a|U|807
5ZEB|1|a|A|808
5ZEB|1|a|G|809
*
5ZEB|1|a|C|839
5ZEB|1|a|G|840
5ZEB|1|a|U|841
5ZEB|1|a|A|842
5ZEB|1|a|G|843
*
5ZEB|1|a|C|850
5ZEB|1|a|A|851
5ZEB|1|a|U|852
5ZEB|1|a|U|853
5ZEB|1|a|A|854
5ZEB|1|a|A|855
5ZEB|1|a|G|856

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8