J3_5ZEP_008

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_008 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1078

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5ZEP|1|A|C|1413
5ZEP|1|A|G|1414
5ZEP|1|A|A|1415
5ZEP|1|A|A|1416
5ZEP|1|A|A|1417
5ZEP|1|A|G|1418
*
5ZEP|1|A|C|1843
5ZEP|1|A|A|1844
5ZEP|1|A|G|1845
*
5ZEP|1|A|U|1857
5ZEP|1|A|A|1858
5ZEP|1|A|A|1859
5ZEP|1|A|G|1860

Current chains

Chain A

23S rRNA

Nearby chains