J3_5ZEP_020

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5ZEP|1|a|U|853, 5ZEP|1|a|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_020 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1152

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5ZEP|1|a|C|806
5ZEP|1|a|U|807
5ZEP|1|a|A|808
5ZEP|1|a|G|809
*
5ZEP|1|a|C|839
5ZEP|1|a|G|840
5ZEP|1|a|U|841
5ZEP|1|a|A|842
5ZEP|1|a|G|843
*
5ZEP|1|a|C|850
5ZEP|1|a|A|851
5ZEP|1|a|U|852
5ZEP|1|a|U|853
5ZEP|1|a|A|854
5ZEP|1|a|A|855
5ZEP|1|a|G|856

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8