J3_5ZEP_037

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUGACAU*GCAG*CUUAUG

Length

18 nucleotides

Bulged bases

5ZEP|1|a|U|1195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_037 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2113

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5ZEP|1|a|U|972
5ZEP|1|a|U|973
5ZEP|1|a|U|974
5ZEP|1|a|G|975
5ZEP|1|a|A|976
5ZEP|1|a|C|977
5ZEP|1|a|A|978
5ZEP|1|a|U|979
*
5ZEP|1|a|G|1024
5ZEP|1|a|C|1025
5ZEP|1|a|A|1026
5ZEP|1|a|G|1027
*
5ZEP|1|a|C|1191
5ZEP|1|a|U|1192
5ZEP|1|a|U|1193
5ZEP|1|a|A|1194
5ZEP|1|a|U|1195
5ZEP|1|a|G|1196

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z