J3_5ZET_009

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5ZET|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZET_009 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1098

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5ZET|1|A|C|1421
5ZET|1|A|A|1422
5ZET|1|A|A|1423
5ZET|1|A|G|1424
*
5ZET|1|A|C|1823
5ZET|1|A|C|1824
5ZET|1|A|C|1825
5ZET|1|A|A|1826
5ZET|1|A|A|1827
5ZET|1|A|A|1828
5ZET|1|A|C|1829
*
5ZET|1|A|G|1838
5ZET|1|A|U|1839
5ZET|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34