J3_5ZLU_018

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUG*CUAAC*GGACAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_018 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.2849

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5ZLU|1|V|G|2090
5ZLU|1|V|U|2091
5ZLU|1|V|U|2092
5ZLU|1|V|G|2093
*
5ZLU|1|V|C|2196
5ZLU|1|V|U|2197
5ZLU|1|V|A|2198
5ZLU|1|V|A|2199
5ZLU|1|V|C|2205
*
5ZLU|1|V|G|2219
5ZLU|1|V|G|2224
5ZLU|1|V|A|2225
5ZLU|1|V|C|2226
5ZLU|1|V|A|2227
5ZLU|1|V|G|2228
5ZLU|1|V|C|2229

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L2

Chain w

50S ribosomal protein L31