J3_5ZLU_019

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

5ZLU|1|V|G|2334, 5ZLU|1|V|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_019 not in the Motif Atlas

Homologous match to J3_7RQB_011

Geometric discrepancy: 0.3041

The information below is about J3_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.4

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5ZLU|1|V|C|2295
5ZLU|1|V|U|2296
5ZLU|1|V|C|2297
*
5ZLU|1|V|G|2321
5ZLU|1|V|A|2322
5ZLU|1|V|G|2323
*
5ZLU|1|V|U|2332
5ZLU|1|V|A|2333
5ZLU|1|V|G|2334
5ZLU|1|V|A|2335
5ZLU|1|V|A|2336
5ZLU|1|V|G|2337

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain X

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L18

Chain t

50S ribosomal protein L27