J3_5ZLU_025

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_025 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1489

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5ZLU|1|G|C|936
5ZLU|1|G|A|937
5ZLU|1|G|A|938
5ZLU|1|G|G|939
*
5ZLU|1|G|C|1344
5ZLU|1|G|U|1345
5ZLU|1|G|A|1346
5ZLU|1|G|G|1347
5ZLU|1|G|U|1348
5ZLU|1|G|A|1349
5ZLU|1|G|A|1350
*
5ZLU|1|G|U|1372
5ZLU|1|G|G|1373
5ZLU|1|G|A|1374
5ZLU|1|G|A|1375
5ZLU|1|G|U|1376
5ZLU|1|G|A|1377
5ZLU|1|G|C|1378
5ZLU|1|G|G|1379

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9