J3_5ZLU_048

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

5ZLU|1|V|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_048 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.3543

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5ZLU|1|V|C|1298
5ZLU|1|V|G|1299
5ZLU|1|V|U|1300
5ZLU|1|V|A|1301
5ZLU|1|V|A|1302
5ZLU|1|V|G|1303
*
5ZLU|1|V|C|1625
5ZLU|1|V|G|1626
5ZLU|1|V|G|1627
*
5ZLU|1|V|U|1639
5ZLU|1|V|C|1640
5ZLU|1|V|A|1641
5ZLU|1|V|G|1642

Current chains

Chain V

23S ribosomal RNA

Nearby chains