J3_5ZLU_049

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

5ZLU|1|V|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_049 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.22

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

5ZLU|1|V|G|1344
5ZLU|1|V|C|1345
5ZLU|1|V|G|1346
5ZLU|1|V|G|1347
5ZLU|1|V|G|1348
5ZLU|1|V|A|1349
5ZLU|1|V|C|1350
*
5ZLU|1|V|G|1381
5ZLU|1|V|G|1382
5ZLU|1|V|C|1383
5ZLU|1|V|A|1384
5ZLU|1|V|G|1385
*
5ZLU|1|V|C|1402
5ZLU|1|V|C|1403

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L23