J3_6AWD_011

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6AWD|1|A|U|1240, 6AWD|1|A|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWD_011 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.3781

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6AWD|1|A|C|1237
6AWD|1|A|A|1238
6AWD|1|A|A|1239
6AWD|1|A|U|1240
6AWD|1|A|G|1241
*
6AWD|1|A|C|1296
6AWD|1|A|G|1297
6AWD|1|A|U|1298
6AWD|1|A|A|1299
6AWD|1|A|G|1300
6AWD|1|A|U|1301
6AWD|1|A|C|1302
6AWD|1|A|C|1303
*
6AWD|1|A|G|1334
6AWD|1|A|U|1335
6AWD|1|A|C|1336
6AWD|1|A|G|1337

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S7

Chain P

30S ribosomal protein S13