J3_6AZ1_001
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GG*CGC(A2M)AAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- 6AZ1|1|1|C|478
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_001 not in the Motif Atlas
- Geometric match to J3_8C3A_082
- Geometric discrepancy: 0.1021
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|G|41
6AZ1|1|1|G|42
*
6AZ1|1|1|C|476
6AZ1|1|1|G|477
6AZ1|1|1|C|478
6AZ1|1|1|A2M|479
6AZ1|1|1|A|480
6AZ1|1|1|A|481
6AZ1|1|1|U|482
*
6AZ1|1|1|A|512
6AZ1|1|1|G|513
6AZ1|1|1|C|514
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain D
- ribosomal protein S4
- Chain P
- ribosomal protein S12
Coloring options: