J3_6AZ1_006
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CUCGUAG*CGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_006 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1088
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|C|1513
6AZ1|1|1|A|1514
6AZ1|1|1|A|1515
6AZ1|1|1|G|1516
*
6AZ1|1|1|C|2001
6AZ1|1|1|U|2002
6AZ1|1|1|C|2003
6AZ1|1|1|G|2004
6AZ1|1|1|U|2005
6AZ1|1|1|A|2006
6AZ1|1|1|G|2007
*
6AZ1|1|1|C|2029
6AZ1|1|1|G|2030
6AZ1|1|1|A|2031
6AZ1|1|1|U|2032
6AZ1|1|1|U|2033
6AZ1|1|1|A|2034
6AZ1|1|1|C|2035
6AZ1|1|1|G|2036
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain H
- ribosomal protein S7
- Chain L
- ribosomal protein S9
- Chain d
- ribosomal protein S28e
Coloring options: