J3_6AZ1_020
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUUGG*CGAGAU*GCAACA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_020 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.2953
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6AZ1|1|1|U|1635
6AZ1|1|1|U|1636
6AZ1|1|1|U|1637
6AZ1|1|1|U|1638
6AZ1|1|1|G|1639
6AZ1|1|1|G|1640
*
6AZ1|1|1|C|1679
6AZ1|1|1|G|1680
6AZ1|1|1|A|1681
6AZ1|1|1|G|1682
6AZ1|1|1|A|1683
6AZ1|1|1|U|1684
*
6AZ1|1|1|G|1820
6AZ1|1|1|C|1821
6AZ1|1|1|A|1822
6AZ1|1|1|A|1823
6AZ1|1|1|C|1824
6AZ1|1|1|A|1825
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain C
- ribosomal protein S3
- Chain F
- ribosomal protein S5
- Chain L
- ribosomal protein S9
- Chain M
- ribosomal protein S10
- Chain S
- ribosomal protein S14
- Chain V
- ribosomal protein S17e
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