J3_6B4V_020
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_020 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.0765
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6B4V|1|B|U|2091
6B4V|1|B|U|2092
6B4V|1|B|G|2093
*
6B4V|1|B|C|2196
6B4V|1|B|U|2197
6B4V|1|B|A|2198
6B4V|1|B|A|2199
6B4V|1|B|C|2205
*
6B4V|1|B|G|2219
6B4V|1|B|G|2224
6B4V|1|B|A|2225
6B4V|1|B|C|2226
6B4V|1|B|A|2227
6B4V|1|B|G|2228
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L2
- Chain J
- 50S ribosomal protein L9
- Chain Y
- 50S ribosomal protein L28
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