J3_6B4V_027
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 6B4V|1|EB|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_027 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1183
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6B4V|1|EB|U|672
6B4V|1|EB|G|673
*
6B4V|1|EB|C|717
6B4V|1|EB|G|718
6B4V|1|EB|C|719
6B4V|1|EB|C|720
6B4V|1|EB|G|721
6B4V|1|EB|A|722
6B4V|1|EB|U|723
6B4V|1|EB|G|724
6B4V|1|EB|G|725
*
6B4V|1|EB|C|732
6B4V|1|EB|A|733
6B4V|1|EB|G|734
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S15
- Chain ED
- 30S ribosomal protein S18
- Chain SC
- 30S ribosomal protein S6
- Chain XC
- 30S ribosomal protein S11
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