J3_6B4V_031

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_031 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2439

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6B4V|1|EB|C|990
6B4V|1|EB|U|991
6B4V|1|EB|U|992
6B4V|1|EB|G|993
*
6B4V|1|EB|C|1045
6B4V|1|EB|A|1046
6B4V|1|EB|G|1047
*
6B4V|1|EB|C|1210
6B4V|1|EB|U|1211
6B4V|1|EB|U|1212
6B4V|1|EB|A|1213
6B4V|1|EB|C|1214
6B4V|1|EB|G|1215

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S14 type Z

Chain NC

Peptide chain release factor 1