J3_6B4V_039

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6B4V|1|FB|G|686, 6B4V|1|FB|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_039 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0722

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6B4V|1|FB|C|683
6B4V|1|FB|G|684
6B4V|1|FB|A|685
6B4V|1|FB|G|686
6B4V|1|FB|C|687
6B4V|1|FB|U|688
6B4V|1|FB|A|689
*
6B4V|1|FB|U|773
6B4V|1|FB|A|774
6B4V|1|FB|G|775
*
6B4V|1|FB|C|791
6B4V|1|FB|G|792
6B4V|1|FB|A|793
6B4V|1|FB|G|794

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IB

50S ribosomal protein L2

Chain IC

50S ribosomal protein L34