J3_6B4V_058

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6B4V|1|B|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_058 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1038

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6B4V|1|B|C|297
6B4V|1|B|G|298
6B4V|1|B|A|299
6B4V|1|B|A|300
6B4V|1|B|G|301
*
6B4V|1|B|C|316
6B4V|1|B|G|317
6B4V|1|B|C|318
6B4V|1|B|C|319
6B4V|1|B|A|320
6B4V|1|B|G|321
6B4V|1|B|A|322
6B4V|1|B|G|323
6B4V|1|B|A|324
6B4V|1|B|G|325
*
6B4V|1|B|C|337
6B4V|1|B|G|338
6B4V|1|B|U|339
6B4V|1|B|A|340
6B4V|1|B|G|341

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain V

50S ribosomal protein L24